Long ago, during the Edo period, those chosen to become ninja train in secrecy from youth, living in an isolated village to become a secret agent for the shogun. Here, a young girl is training to become such an agent; her name: Ran Sagajo. Along with her talking ninja squirrel companion Sasuke, she has begun a trip to Edo to continue her training.

Kunoichi Torimonoch? (Kunoichi Detective Story) is a Japanese-style adventure game. Take the role of Ran and travel around Edo, interact with a variety of colorful characters, play numerous minigames, and attempt to train Ran into a proper Kunoichi. There are multiple endings depending upon your choices and performance through the game.